This is the development version of sosta; for the stable release version, see sosta.
A package for the analysis of anatomical tissue structures in spatial omics dataBioconductor version: Development (3.22)
sosta (Spatial Omics STructure Analysis) is a package for analyzing spatial omics data to explore tissue organization at the anatomical structure level. It reconstructs anatomically relevant structures based on molecular features or cell types. It further calculates a range of metrics at the structure level to quantitatively describe tissue architecture. The package is designed to integrate with other packages for the analysis of spatial omics data.
Author: Samuel Gunz [aut, cre] ORCID: 0000-0002-8909-0932 , Mark D. Robinson [aut, fnd]
Maintainer: Samuel Gunz <samuel.gunz at uzh.ch>
Citation (from within R, entercitation("sosta")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("sosta")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sosta")Follow Installation instructions to use this package in your R session.
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