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Bioconductor - snpStats (development version)

snpStats

This is the development version of snpStats; for the stable release version, see snpStats.

SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: Development (3.22)

Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

Author: David Clayton <dc208 at cam.ac.uk>

Maintainer: David Clayton <dc208 at cam.ac.uk>

Citation (from within R, enter citation("snpStats")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("snpStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("snpStats")
Details biocViews GeneticVariability, Microarray, SNP, Software Version 1.59.2 In Bioconductor since BioC 2.8 (R-2.13) (14 years) License GPL-3 Depends R (>= 2.10.0), survival, Matrix, methods Imports graphics, grDevices, stats, utils, BiocGenerics System Requirements URL See More Suggests hexbin Linking To Enhances Depends On Me MAGAR Imports Me cardelino, DExMA, gwascat, martini, RVS, scoreInvHap, dartR.base, GenomicTools.fileHandler, gpcp, GWASbyCluster, PhenotypeSimulator, TriadSim Suggests Me crlmm, GenomicFiles, GWASTools, ldblock, omicRexposome, omicsPrint, VariantAnnotation, adjclust, dartR, dartR.popgen, genio, pegas, RcppDPR, statgenGWAS Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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