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Bioconductor - scds (development version)

scds

This is the development version of scds; for the stable release version, see scds.

In-Silico Annotation of Doublets for Single Cell RNA Sequencing Data

Bioconductor version: Development (3.22)

In single cell RNA sequencing (scRNA-seq) data combinations of cells are sometimes considered a single cell (doublets). The scds package provides methods to annotate doublets in scRNA-seq data computationally.

Author: Dennis Kostka [aut, cre], Bais Abha [aut]

Maintainer: Dennis Kostka <kostka at pitt.edu>

Citation (from within R, enter citation("scds")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("scds")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scds")
Details biocViews Classification, GeneExpression, Preprocessing, QualityControl, RNASeq, Sequencing, SingleCell, Software, Transcriptomics Version 1.25.0 In Bioconductor since BioC 3.9 (R-3.6) (6 years) License MIT + file LICENSE Depends R (>= 3.6.0) Imports Matrix, S4Vectors, SingleCellExperiment, SummarizedExperiment, xgboost, methods, stats, dplyr, pROC System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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