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Bioconductor - miRSM (development version)

miRSM

This is the development version of miRSM; for the stable release version, see miRSM.

Inferring miRNA sponge modules in heterogeneous data

Bioconductor version: Development (3.22)

The package aims to identify miRNA sponge or ceRNA modules in heterogeneous data. It provides several functions to study miRNA sponge modules at single-sample and multi-sample levels, including popular methods for inferring gene modules (candidate miRNA sponge or ceRNA modules), and two functions to identify miRNA sponge modules at single-sample and multi-sample levels, as well as several functions to conduct modular analysis of miRNA sponge modules.

Author: Junpeng Zhang [aut, cre]

Maintainer: Junpeng Zhang <zjp at dali.edu.cn>

Citation (from within R, enter citation("miRSM")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("miRSM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRSM")
miRSM: inferring miRNA sponge modules in heterogeneous data HTML R Script Reference Manual PDF NEWS Text Details biocViews BiomedicalInformatics, Clustering, GeneExpression, GeneRegulation, GeneSetEnrichment, GeneTarget, Microarray, Software Version 2.5.4 In Bioconductor since BioC 3.8 (R-3.5) (6.5 years) License GPL-3 Depends R (>= 4.4.0) Imports WGCNA, flashClust, dynamicTreeCut, GFA, igraph, RColorBrewer, grid, MCL, fabia, NMF, biclust, iBBiG, BicARE, isa2, methods, rJava, BiBitR, rqubic, Biobase, PMA, stats, dbscan, mclust, SOMbrero, ppclust, Rcpp, utils, SummarizedExperiment, GSEABase, org.Hs.eg.db, clusterProfiler, ReactomePA, DOSE, MatrixCorrelation, energy System Requirements URL https://github.com/zhangjunpeng411/miRSM Bug Reports https://github.com/zhangjunpeng411/miRSM/issues See More Package Archives

Follow Installation instructions to use this package in your R session.

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