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Bioconductor - miRNAtap (development version)

miRNAtap

This is the development version of miRNAtap; for the stable release version, see miRNAtap.

miRNAtap: microRNA Targets - Aggregated Predictions

Bioconductor version: Development (3.22)

The package facilitates implementation of workflows requiring miRNA predictions, it allows to integrate ranked miRNA target predictions from multiple sources available online and aggregate them with various methods which improves quality of predictions above any of the single sources. Currently predictions are available for Homo sapiens, Mus musculus and Rattus norvegicus (the last one through homology translation).

Author: Maciej Pajak, T. Ian Simpson

Maintainer: T. Ian Simpson <ian.simpson at ed.ac.uk>

Citation (from within R, enter citation("miRNAtap")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("miRNAtap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRNAtap")
Details biocViews Classification, Microarray, Sequencing, Software, miRNA Version 1.43.0 In Bioconductor since BioC 3.0 (R-3.1) (10.5 years) License GPL-2 Depends R (>= 3.3.0), AnnotationDbi Imports DBI, RSQLite, stringr, sqldf, plyr, methods System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.


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