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Bioconductor - miRLAB (development version)

miRLAB

This is the development version of miRLAB; for the stable release version, see miRLAB.

Dry lab for exploring miRNA-mRNA relationships

Bioconductor version: Development (3.22)

Provide tools exploring miRNA-mRNA relationships, including popular miRNA target prediction methods, ensemble methods that integrate individual methods, functions to get data from online resources, functions to validate the results, and functions to conduct enrichment analyses.

Author: Thuc Duy Le, Junpeng Zhang, Mo Chen, Vu Viet Hoang Pham

Maintainer: Thuc Duy Le <Thuc.Le at unisa.edu.au>

Citation (from within R, enter citation("miRLAB")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("miRLAB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRLAB")
Details biocViews GeneExpression, Network, NetworkInference, Software, miRNA Version 1.39.0 In Bioconductor since BioC 3.2 (R-3.2) (9.5 years) License GPL (>=2) Depends Imports methods, stats, utils, RCurl, httr, stringr, Hmisc, energy, entropy, gplots, glmnet, impute, limma, pcalg, TCGAbiolinks, dplyr, SummarizedExperiment, ctc, InvariantCausalPrediction, Category, GOstats, org.Hs.eg.db System Requirements URL https://github.com/pvvhoang/miRLAB See More Package Archives

Follow Installation instructions to use this package in your R session.

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