This is the development version of metapone; for the stable release version, see metapone.
Conducts pathway test of metabolomics data using a weighted permutation testBioconductor version: Development (3.22)
The package conducts pathway testing from untargetted metabolomics data. It requires the user to supply feature-level test results, from case-control testing, regression, or other suitable feature-level tests for the study design. Weights are given to metabolic features based on how many metabolites they could potentially match to. The package can combine positive and negative mode results in pathway tests.
Author: Leqi Tian [aut], Tianwei Yu [aut], Tianwei Yu [cre]
Maintainer: Tianwei Yu <yutianwei at cuhk.edu.cn>
Citation (from within R, entercitation("metapone")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("metapone")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("metapone")Follow Installation instructions to use this package in your R session.
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