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Bioconductor - h5vc (development version)

h5vc

This is the development version of h5vc; for the stable release version, see h5vc.

Managing alignment tallies using a hdf5 backend

Bioconductor version: Development (3.22)

This package contains functions to interact with tally data from NGS experiments that is stored in HDF5 files.

Author: Paul Theodor Pyl

Maintainer: Paul Theodor Pyl <paul.theodor.pyl at gmail.com>

Citation (from within R, enter citation("h5vc")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("h5vc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("h5vc")
Details biocViews Software Version 2.43.0 In Bioconductor since BioC 2.13 (R-3.0) (11.5 years) License GPL (>= 3) Depends grid, gridExtra, ggplot2 Imports rhdf5, reshape, S4Vectors, IRanges, Biostrings, Rsamtools(>= 2.13.1), methods, GenomicRanges, abind, BiocParallel, BatchJobs, h5vcData, GenomeInfoDb System Requirements GNU make URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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