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Bioconductor - flowCore (development version)

flowCore

This is the development version of flowCore; for the stable release version, see flowCore.

flowCore: Basic structures for flow cytometry data

Bioconductor version: Development (3.22)

Provides S4 data structures and basic functions to deal with flow cytometry data.

Author: B Ellis [aut], Perry Haaland [aut], Florian Hahne [aut], Nolwenn Le Meur [aut], Nishant Gopalakrishnan [aut], Josef Spidlen [aut], Mike Jiang [aut, cre], Greg Finak [aut], Samuel Granjeaud [ctb]

Maintainer: Mike Jiang <mike at ozette.com>

Citation (from within R, enter citation("flowCore")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("flowCore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowCore")

Details biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Infrastructure, Software Version 2.21.0 In Bioconductor since BioC 2.0 (R-2.5) (18 years) License Artistic-2.0 Depends R (>= 3.5.0) Imports Biobase, BiocGenerics(>= 0.29.2), grDevices, graphics, methods, stats, utils, stats4, Rcpp, matrixStats, cytolib(>= 2.13.1), S4Vectors System Requirements GNU make, C++11 URL See More Suggests Rgraphviz, flowViz, flowStats(>= 3.43.4), testthat, flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto, gridExtra Linking To cpp11, BH (>= 1.81.0.0), cytolib, RProtoBufLib Enhances Depends On Me flowBeads, flowBin, flowClean, flowCut, flowFP, flowMatch, flowTime, flowTrans, flowViz, flowVS, ggcyto, immunoClust, infinityFlow, ncdfFlow, HDCytoData, healthyFlowData, highthroughputassays Imports Me CATALYST, cmapR, cyanoFilter, cydar, cytofQC, CytoMDS, cytoMEM, CytoML, CytoPipeline, CytoPipelineGUI, ddPCRclust, diffcyt, flowAI, flowBeads, flowCHIC, flowClust, flowDensity, flowGate, flowMeans, flowPloidy, FlowSOM, flowSpecs, flowStats, flowTrans, flowViz, flowWorkspace, GateFinder, MAPFX, MetaCyto, openCyto, PeacoQC, scDataviz, scifer, Sconify, tidyFlowCore, tidytof Suggests Me COMPASS, flowPeaks, flowPloidyData, hypergate, MuPETFlow, segmenTier Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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