This is the development version of cosmosR; for the stable release version, see cosmosR.
COSMOS (Causal Oriented Search of Multi-Omic Space)Bioconductor version: Development (3.22)
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets based on prior knowledge of signaling, metabolic, and gene regulatory networks. It estimated the activities of transcrption factors and kinases and finds a network-level causal reasoning. Thereby, COSMOS provides mechanistic hypotheses for experimental observations across mulit-omics datasets.
Author: Aurélien Dugourd [aut] ORCID: 0000-0002-0714-028X , Attila Gabor [cre] ORCID: 0000-0002-0776-1182 , Katharina Zirngibl [aut] ORCID: 0000-0002-7518-0339
Maintainer: Attila Gabor <attila.gabor at uni-heidelberg.de>
Citation (from within R, entercitation("cosmosR")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("cosmosR")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cosmosR")Follow Installation instructions to use this package in your R session.
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