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Bioconductor - ToxicoGx (development version)

ToxicoGx

This is the development version of ToxicoGx; for the stable release version, see ToxicoGx.

Analysis of Large-Scale Toxico-Genomic Data

Bioconductor version: Development (3.22)

Contains a set of functions to perform large-scale analysis of toxicogenomic data, providing a standardized data structure to hold information relevant to annotation, visualization and statistical analysis of toxicogenomic data.

Author: Sisira Nair [aut], Esther Yoo [aut], Christopher Eeles [aut], Amy Tang [aut], Nehme El-Hachem [aut], Petr Smirnov [aut], Jermiah Joseph [aut], Benjamin Haibe-Kains [aut, cre]

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>

Citation (from within R, enter citation("ToxicoGx")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ToxicoGx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ToxicoGx")
ToxicoGx: An R Platform for Integrated Toxicogenomics Data Analysis HTML R Script Reference Manual PDF NEWS Text LICENSE Text Details biocViews GeneExpression, Pharmacogenetics, Pharmacogenomics, Software Version 2.13.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License MIT + file LICENSE Depends R (>= 4.1), CoreGx Imports SummarizedExperiment, BiocGenerics, S4Vectors, Biobase, BiocParallel, ggplot2, tibble, dplyr, caTools, downloader, magrittr, methods, reshape2, tidyr, data.table, assertthat, scales, graphics, grDevices, parallel, stats, utils, limma, jsonlite System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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