This is the development version of QuasR; for the stable release version, see QuasR.
Quantify and Annotate Short Reads in RBioconductor version: Development (3.22)
This package provides a framework for the quantification and analysis of Short Reads. It covers a complete workflow starting from raw sequence reads, over creation of alignments and quality control plots, to the quantification of genomic regions of interest. Read alignments are either generated through Rbowtie (data from DNA/ChIP/ATAC/Bis-seq experiments) or Rhisat2 (data from RNA-seq experiments that require spliced alignments), or can be provided in the form of bam files.
Author: Anita Lerch [aut], Adam Alexander Thil SMITH [aut] ORCID: 0000-0003-4593-3042 , Charlotte Soneson [aut] ORCID: 0000-0003-3833-2169 , Dimos Gaidatzis [aut], Michael Stadler [aut, cre] ORCID: 0000-0002-2269-4934
Maintainer: Michael Stadler <michael.stadler at fmi.ch>
Citation (from within R, entercitation("QuasR")): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("QuasR")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("QuasR")Follow Installation instructions to use this package in your R session.
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