This is the development version of MiRaGE; for the stable release version, see MiRaGE.
MiRNA Ranking by Gene ExpressionBioconductor version: Development (3.22)
The package contains functions for inferece of target gene regulation by miRNA, based on only target gene expression profile.
Author: Y-h. Taguchi <tag at granular.com>
Maintainer: Y-h. Taguchi <tag at granular.com>
Citation (from within R, entercitation("MiRaGE")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MiRaGE")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MiRaGE")
Details biocViews GeneExpression, ImmunoOncology, Microarray, RNASeq, SAGE, Sequencing, Software Version 1.51.0 In Bioconductor since BioC 2.11 (R-2.15) (13 years) License GPL Depends R (>= 3.1.0), Biobase(>= 2.23.3) Imports BiocGenerics, S4Vectors, AnnotationDbi, BiocManager System Requirements URL See More Suggests seqinr (>= 3.0.7), biomaRt(>= 2.19.1), GenomicFeatures(>= 1.15.4), Biostrings(>= 2.31.3), BSgenome.Hsapiens.UCSC.hg19, BSgenome.Mmusculus.UCSC.mm10, miRNATarget, humanStemCell, IRanges, GenomicRanges(>= 1.8.3), BSgenome, beadarrayExampleData Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives
Follow Installation instructions to use this package in your R session.
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