This is the development version of MOGAMUN; for the stable release version, see MOGAMUN.
MOGAMUN: A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological NetworksBioconductor version: Development (3.22)
MOGAMUN is a multi-objective genetic algorithm that identifies active modules in a multiplex biological network. This allows analyzing different biological networks at the same time. MOGAMUN is based on NSGA-II (Non-Dominated Sorting Genetic Algorithm, version II), which we adapted to work on networks.
Author: Elva-MarÃa Novoa-del-Toro [aut, cre] ORCID: 0000-0002-6135-5839
Maintainer: Elva-MarÃa Novoa-del-Toro <elvanov at hotmail.com>
Citation (from within R, entercitation("MOGAMUN")
): Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MOGAMUN")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MOGAMUN")
Details biocViews BiomedicalInformatics, Clustering, DifferentialExpression, GraphAndNetwork, Network, Software, SystemsBiology, Transcriptomics Version 1.19.0 In Bioconductor since BioC 3.12 (R-4.0) (4.5 years) License GPL-3 + file LICENSE Depends Imports stats, utils, RCy3, stringr, graphics, grDevices, RUnit, BiocParallel, igraph System Requirements URL https://github.com/elvanov/MOGAMUN See More Package Archives
Follow Installation instructions to use this package in your R session.
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