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Bioconductor - MBQN (development version)

MBQN

This is the development version of MBQN; for the stable release version, see MBQN.

Mean/Median-balanced quantile normalization

Bioconductor version: Development (3.22)

Modified quantile normalization for omics or other matrix-like data distorted in location and scale.

Author: Eva Brombacher [aut, cre] ORCID: 0000-0002-5488-0985 , Clemens Kreutz [aut, ctb] ORCID: 0000-0002-8796-5766 , Ariane Schad [aut, ctb] ORCID: 0000-0002-1921-8902

Maintainer: Eva Brombacher <brombach at imbi.uni-freiburg.de>

Citation (from within R, enter citation("MBQN")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MBQN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MBQN")
Details biocViews Normalization, Preprocessing, Proteomics, Software Version 2.21.0 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License GPL-3 + file LICENSE Depends R (>= 3.6) Imports stats, graphics, utils, limma(>= 3.30.13), SummarizedExperiment(>= 1.10.0), preprocessCore(>= 1.36.0), BiocFileCache, rappdirs, xml2, RCurl, ggplot2, PairedData, rmarkdown System Requirements URL https://github.com/arianeschad/mbqn Bug Reports https://github.com/arianeschad/MBQN/issues See More Suggests knitr Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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