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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../../bioc/html/../../bioc/html/IMAS.html below:

Bioconductor - IMAS (development version)

IMAS

This is the development version of IMAS; for the stable release version, see IMAS.

Integrative analysis of Multi-omics data for Alternative Splicing

Bioconductor version: Development (3.22)

Integrative analysis of Multi-omics data for Alternative splicing.

Author: Seonggyun Han, Younghee Lee

Maintainer: Seonggyun Han <hangost at ssu.ac.kr>

Citation (from within R, enter citation("IMAS")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("IMAS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("IMAS")
IMAS : Integrative analysis of Multi-omics data for Alternative Splicing PDF R Script Reference Manual PDF NEWS Text Details biocViews AlternativeSplicing, DifferentialExpression, DifferentialSplicing, GeneExpression, GeneRegulation, ImmunoOncology, RNASeq, Regression, SNP, Sequencing, Software, Transcription Version 1.33.0 In Bioconductor since BioC 3.5 (R-3.4) (8 years) License GPL-2 Depends R (> 3.0.0), GenomicFeatures, ggplot2, IVAS Imports doParallel, lme4, BiocGenerics, GenomicRanges, IRanges, foreach, AnnotationDbi, S4Vectors, GenomeInfoDb, stats, ggfortify, grDevices, methods, Matrix, utils, graphics, gridExtra, grid, lattice, Rsamtools, survival, BiocParallel, GenomicAlignments, parallel System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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