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Bioconductor - ExiMiR (development version)

ExiMiR

This is the development version of ExiMiR; for the stable release version, see ExiMiR.

R functions for the normalization of Exiqon miRNA array data

Bioconductor version: Development (3.22)

This package contains functions for reading raw data in ImaGene TXT format obtained from Exiqon miRCURY LNA arrays, annotating them with appropriate GAL files, and normalizing them using a spike-in probe-based method. Other platforms and data formats are also supported.

Author: Sylvain Gubian <DL.RSupport at pmi.com>, Alain Sewer <DL.RSupport at pmi.com>, PMP SA

Maintainer: Sylvain Gubian <DL.RSupport at pmi.com>

Citation (from within R, enter citation("ExiMiR")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ExiMiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ExiMiR")
Details biocViews GeneExpression, Microarray, OneChannel, Preprocessing, Software, Transcription, TwoChannel Version 2.51.0 In Bioconductor since BioC 2.8 (R-2.13) (14 years) License GPL-2 Depends R (>= 2.10), Biobase(>= 2.5.5), affy(>= 1.26.1), limma Imports affyio(>= 1.13.3), Biobase(>= 2.5.5), preprocessCore(>= 1.10.0) System Requirements URL See More Suggests mirna10cdf Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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