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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../../bioc/html/../../bioc/html/CAFE.html below:

Bioconductor - CAFE (development version)

CAFE

This is the development version of CAFE; for the stable release version, see CAFE.

Chromosmal Aberrations Finder in Expression data

Bioconductor version: Development (3.22)

Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input

Author: Sander Bollen

Maintainer: Sander Bollen <sander.h.bollen at gmail.com>

Citation (from within R, enter citation("CAFE")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("CAFE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CAFE")
Details biocViews GeneExpression, GeneSetEnrichment, Microarray, OneChannel, Software Version 1.45.0 In Bioconductor since BioC 2.14 (R-3.1) (11 years) License GPL-3 Depends R (>= 2.10), biovizBase, GenomicRanges, IRanges, ggbio Imports affy, ggplot2, annotate, grid, gridExtra, tcltk, Biobase System Requirements URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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