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Showing content from https://www.bioconductor.org/packages/devel/bioc/html/../../bioc/html/../../bioc/html/BioTIP.html below:

Bioconductor - BioTIP (development version)

BioTIP

This is the development version of BioTIP; for the stable release version, see BioTIP.

BioTIP: An R package for characterization of Biological Tipping-Point

Bioconductor version: Development (3.22)

Adopting tipping-point theory to transcriptome profiles to unravel disease regulatory trajectory.

Author: Zhezhen Wang, Andrew Goldstein, Yuxi Sun, Biniam Feleke, Qier An, Antonio Feliciano, Xinan Yang

Maintainer: Felix Yu <felixy at uchicago.edu> and X Holly Yang <xyang2 at uchicago.edu>

Citation (from within R, enter citation("BioTIP")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BioTIP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioTIP")
BioTIP- an R package for characterization of Biological Tipping-Point HTML R Script Reference Manual PDF Details biocViews GeneExpression, RNASeq, Sequencing, Software, Transcription Version 1.23.1 In Bioconductor since BioC 3.10 (R-3.6) (5.5 years) License GPL-2 Depends R (>= 3.6) Imports igraph, cluster, psych, stringr, GenomicRanges, MASS, scran, methods, stats, utils, grDevices, graphics, foreach, doParallel System Requirements URL https://github.com/xyang2uchicago/BioTIP See More Package Archives

Follow Installation instructions to use this package in your R session.

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