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Bioconductor - ACE (development version)

ACE

This is the development version of ACE; for the stable release version, see ACE.

Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing

Bioconductor version: Development (3.22)

Uses segmented copy number data to estimate tumor cell percentage and produce copy number plots displaying absolute copy numbers.

Author: Jos B Poell

Maintainer: Jos B Poell <j.poell at amsterdamumc.nl>

Citation (from within R, enter citation("ACE")): Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("ACE")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ACE")
Details biocViews CopyNumberVariation, Coverage, DNASeq, Sequencing, Software, Visualization, WholeGenome Version 1.27.0 In Bioconductor since BioC 3.8 (R-3.5) (6.5 years) License GPL-2 Depends R (>= 3.4) Imports Biobase, QDNAseq, ggplot2, grid, stats, utils, methods, grDevices, GenomicRanges System Requirements URL https://github.com/tgac-vumc/ACE See More Package Archives

Follow Installation instructions to use this package in your R session.

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