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TFutils

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see TFutils.

TFutils

Bioconductor version: 3.10

Package to work with TF metadata from various sources.

Author: Vincent Carey [aut], Shweta Gopaulakrishnan [cre, aut]

Maintainer: Shweta Gopaulakrishnan <reshg at channing.harvard.edu>

Citation (from within R, enter citation("TFutils")): Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TFutils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TFutils")

Details biocViews Software, Transcriptomics Version 1.6.0 In Bioconductor since BioC 3.7 (R-3.5) (6 years) License Artistic-2.0 Depends R (>= 3.5.0) Imports methods, dplyr, magrittr, miniUI, shiny, Rsamtools, GSEABase System Requirements URL See More Suggests knitr, data.table, testthat, AnnotationDbi, AnnotationFilter, Biobase, GenomicFeatures, GenomicRanges, Gviz, IRanges, Rsamtools, S4Vectors, org.Hs.eg.db, EnsDb.Hsapiens.v75, BiocParallel, BiocStyle, GO.db, GenomicFiles, GenomeInfoDb, SummarizedExperiment, UpSetR, ggplot2, png, gwascat, MotifDb, motifStack, RColorBrewer Linking To Enhances Depends On Me Imports Me Suggests Me TxRegInfra Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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