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Bioconductor - Rcwl

Rcwl

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see Rcwl.

Wrap Command Tools and Pipelines Using CWL

Bioconductor version: 3.10

The package can be a simple and user-friendly way to manage command line tools and build data analysis pipelines in R using Common Workflow Language (CWL).

Author: Qiang Hu [aut, cre], Qian Liu [aut]

Maintainer: Qiang Hu <qiang.hu at roswellpark.org>

Citation (from within R, enter citation("Rcwl")): Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rcwl")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rcwl")
Details biocViews ImmunoOncology, Software, WorkflowStep Version 1.2.1 In Bioconductor since BioC 3.9 (R-3.6) (5 years) License GPL-2 | file LICENSE Depends R (>= 3.6), yaml, methods, S4Vectors Imports utils, stats, BiocParallel, batchtools, DiagrammeR, shiny, R.utils, codetools System Requirements python (>= 2.7), cwltool (>= 1.0.2018) URL See More Package Archives

Follow Installation instructions to use this package in your R session.

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