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DEWSeq

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see DEWSeq.

Differential Expressed Windows Based on Negative Binomial Distribution

Bioconductor version: 3.10

Differential expression analysis of windows for next-generation sequencing data like eCLIP or iCLIP data.

Author: Sudeep Sahadevan <sahadeva at embl.de>, Thomas Schwarzl <schwarzl at embl.de>

Maintainer: Hentze bioinformatics team <biohentze at embl.de>

Citation (from within R, enter citation("DEWSeq")): Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DEWSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEWSeq")

Details biocViews DifferentialExpression, FunctionalGenomics, GeneRegulation, Sequencing, Software Version 1.0.6 In Bioconductor since BioC 3.10 (R-3.6) (4.5 years) License LGPL (>= 3) Depends R (>= 3.6.0), R.utils, DESeq2, BiocParallel Imports BiocGenerics, data.table (>= 1.11.8), GenomeInfoDb, GenomicRanges, methods, S4Vectors, SummarizedExperiment, stats, utils System Requirements URL https://github.com/EMBL-Hentze-group/DEWSeq/ Bug Reports https://github.com/EMBL-Hentze-group/DEWSeq/issues See More Suggests knitr, rmarkdown, testthat, BiocStyle, IHW Linking To Enhances Depends On Me Imports Me Suggests Me Links To Me Build Report Build Report Package Archives

Follow Installation instructions to use this package in your R session.

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