This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see BiocStyle.
Standard styles for vignettes and other Bioconductor documentsBioconductor version: 3.10
Provides standard formatting styles for Bioconductor PDF and HTML documents. Package vignettes illustrate use and functionality.
Author: Andrzej OleÅ, Martin Morgan, Wolfgang Huber
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, entercitation("BiocStyle")
): Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BiocStyle")
For older versions of R, please refer to the appropriate Bioconductor release.
DocumentationTo view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BiocStyle")
Details See More Suggests BiocGenerics, RUnit, htmltools Linking To Enhances Depends On Me curatedBreastData, cytofWorkflow, methylationArrayAnalysis, org.Mxanthus.db, rnaseqGene Imports Me abseqR, ASpli, BiocWorkflowTools, BPRMeth, BubbleTree, chimeraviz, COMPASS, deco, DiscoRhythm, geneXtendeR, Melissa, PathoStat, PhyloProfile, regionReport, Rmmquant, Rqc, scTensor, scTGIF, srnadiff Suggests Me ABAData, ABAEnrichment, ACE, ADAMgui, adaptest, AffiXcan, affycoretools, AHEnsDbs, ALDEx2, alevinQC, AllelicImbalance, allenpvc, AMOUNTAIN, amplican, AneuFinder, animalcules, annotation, AnnotationDbi, AnnotationFilter, AnnotationForge, AnnotationHub, AnnotationHubData, annotatr, anota2seq, APAlyzer, arrayQualityMetrics, arrays, artMS, ASGSCA, ASICS, ASICSdata, AssessORF, AssessORFData, ASSIGN, ATACseqQC, atSNP, AUCell, BaalChIP, bacon, bamsignals, BANDITS, basecallQC, BASiCS, batchelor, BayesPeak, bayNorm, baySeq, beachmat, beadarray, BeadDataPackR, BEARscc, BEclear, benchmarkfdrData2019, BgeeDB, bigmelon, bigmemoryExtras, bioassayR, bioCancer, BiocCheck, BiocFileCache, BiocMetaWorkflow, BiocNeighbors, BiocOncoTK, BioCor, BiocParallel, BiocPkgTools, BiocSet, BiocSingular, BiocSklearn, biomaRt, biomformat, BioMM, biosigner, biotmle, BitSeq, blacksheepr, blima, blimaTestingData, BloodCancerMultiOmics2017, bnbc, bodymapRat, brainflowprobes, branchpointer, breakpointR, breakpointRdata, brendaDb, BridgeDbR, BrowserViz, bsseq, BUMHMM, BUScorrect, BUSpaRse, CAFE, CAGEfightR, CAGEr, CAGEWorkflow, CAMTHC, CancerInSilico, CAnD, Cardinal, CardinalWorkflows, CATALYST, cbaf, ccfindR, ccrepe, celda, cellbaseR, CellBench, cellity, CellMapper, CellMapperData, CellMixS, cellTree, CexoR, ChemmineDrugs, ChemmineOB, ChemmineR, Chicago, ChIPComp, chipenrich, chipenrich.data, ChIPexoQual, ChIPpeakAnno, ChIPQC, chipseqDB, chipseqDBData, ChIPSeqSpike, chromstaR, chromswitch, ClassifyR, cleanUpdTSeq, cleaver, clipper, CLLmethylation, clusterExperiment, clusterSeq, ClusterSignificance, CNEr, CNVRanger, COCOA, CoGAPS, coMET, compcodeR, CONFESS, consensusOV, consensusSeekeR, contiBAIT, conumee, CopyhelpeR, CopyNeutralIMA, CopyNumberPlots, CopywriteR, coRdon, CoRegNet, COSMIC.67, cosmiq, CountClust, covRNA, cpvSNP, CRISPRseek, CrispRVariants, csaw, csawUsersGuide, CTDquerier, ctsGE, curatedBladderData, curatedCRCData, curatedMetagenomicData, curatedOvarianData, curatedTCGAData, CVE, cydar, cytofast, dada2, dagLogo, DaMiRseq, DAPAR, dcanr, DChIPRep, ddPCRclust, debCAM, decompTumor2Sig, decontam, DEFormats, DEGreport, DelayedArray, DelayedMatrixStats, DEP, DepecheR, depmap, DEqMS, derfinder, derfinderHelper, derfinderPlot, DEScan2, DEWSeq, DEXSeq, DiffBind, diffcyt, diffuStats, discordant, DmelSGI, dmrseq, DNABarcodeCompatibility, DNABarcodes, doppelgangR, Doscheda, doseR, drawProteins, DRIMSeq, DropletUtils, dSimer, DSS, DuoClustering2018, dupRadar, easyRNASeq, EBImage, EDASeq, EGSEA, EGSEA123, eiR, ELMER, ELMER.data, EmpiricalBrownsMethod, EnrichmentBrowser, ensembldb, EpiDISH, epivizr, epivizrChart, epivizrData, epivizrServer, epivizrStandalone, eQTL, erma, ERSSA, EuPathDB, evaluomeR, EventPointer, ExperimentHub, ExperimentHubData, ExpressionNormalizationWorkflow, FamAgg, FastqCleaner, fCCAC, fCI, fcScan, FELLA, FindMyFriends, flowcatchR, flowMap, FlowSOM, flowSpecs, flowSpy, fmcsR, FourCSeq, furrowSeg, GA4GHclient, GA4GHshiny, GARS, gcapc, GDSArray, genbankr, GeneAccord, genefilter, GeneNetworkBuilder, GeneOverlap, geneplast, generegulation, GENESIS, GeneStructureTools, GenoGAM, GenomeInfoDb, GenomicAlignments, GenomicDataCommons, GenomicFeatures, GenomicFiles, GenomicInteractions, GenomicRanges, GenomicScores, GenomicState, GenomicTuples, genoset, GenVisR, GeuvadisTranscriptExpr, ggbio, GladiaTOX, Glimma, glmSparseNet, GMRP, GOexpress, GOfuncR, GOpro, goSTAG, gpart, gpuMagic, gQTLBase, gQTLstats, graper, graphite, GreyListChIP, GRmetrics, groHMM, GSAR, GSE62944, GSEABase, GSEABenchmarkeR, GUIDEseq, Gviz, gwasurvivr, Harman, HarmanData, HCABrowser, HCAData, HCAExplorer, HD2013SGI, HDCytoData, HDF5Array, HelloRanges, HelloRangesData, HiCBricks, highthroughputassays, Hiiragi2013, HiLDA, hipathia, HIREewas, HiTC, HMP16SData, HMP2Data, HPAanalyze, hpAnnot, hpar, HTSFilter, HumanAffyData, HumanTranscriptomeCompendium, ideal, iGC, IgGeneUsage, igvR, IHW, IHWpaper, illuminaio, imageHTS, IMAS, Imetagene, immunoClust, infercnv, InPAS, INSPEcT, InTAD, InteractionSet, InterMineR, IONiseR, IRanges, iSEE, isomiRs, IVAS, JctSeqData, JunctionSeq, karyoploteR, kissDE, ldblock, liftOver, LinkHD, Linnorm, lipidr, loci2path, Logolas, LOLA, LoomExperiment, LowMACA, lpsymphony, LRBaseDbi, M3D, MACPET, maEndToEnd, mAPKL, maser, MAST, MatrixRider, matter, MaxContrastProjection, MBASED, mbkmeans, MBttest, MCbiclust, mCSEA, mCSEAdata, mdgsa, MEAL, MEDIPS, messina, MetaboSignal, metagene, metagene2, metagenomeFeatures, metavizr, methimpute, methInheritSim, MethPed, MethylAid, MethylAidData, methylCC, methylInheritance, MethylMix, methyvim, methyvimData, MetNet, mfa, microbiome, mimager, minfi, minionSummaryData, MIRA, miRcomp, miRmine, miRSM, miRspongeR, missMethyl, missRows, mixOmics, mlm4omics, MLSeq, MMAPPR2, MMAPPR2data, MMDiff2, MMUPHin, MODA, Modstrings, mogsa, MoonlightR, MOSim, motifbreakR, motifStack, MouseGastrulationData, mpra, MSMB, MSnbase, MSnID, msPurity, msqc1, MSstats, MSstatsBioData, MSstatsSampleSize, MSstatsTMT, MTseeker, MultiAssayExperiment, MultiDataSet, multiHiCcompare, multiMiR, muscat, muscData, MutationalPatterns, MWASTools, mygene, myvariant, mzR, NADfinder, NanoStringDiff, NanoStringQCPro, nanotubes, NarrowPeaks, ncGTW, ndexr, NestLink, netbiov, nethet, NetPathMiner, netprioR, netReg, netSmooth, ngsReports, nondetects, NormalyzerDE, normr, npGSEA, nucleoSim, nucleR, oligo, omicade4, omicRexposome, OmicsMarkeR, omicsPrint, OmnipathR, Onassis, OnassisJavaLibs, OncoScore, OncoSimulR, ontoProc, OPWeight, ORFik, Organism.dplyr, Oscope, OUTRIDER, OVESEG, PAA, PAIRADISE, PANTHER.db, PanVizGenerator, parathyroidSE, parglms, pasilla, PasillaTranscriptExpr, Path2PPI, paxtoolsr, Pbase, pcaExplorer, PCAN, PCHiCdata, peakPantheR, PepsNMR, PepsNMRData, perturbatr, PGA, phantasus, phenopath, philr, phyloseq, Pi, piano, Pigengene, plethy, plotGrouper, plyranges, Polyfit, PoTRA, powerTCR, pqsfinder, pram, PrecisionTrialDrawer, PrInCE, profileplyr, profileScoreDist, projectR, pRoloc, pRolocGUI, PROPER, Prostar, proteomics, ProteomicsAnnotationHubData, ProteoMM, proteoQC, PSEA, PureCN, PWMEnrich, qcmetrics, QDNAseq, qpgraph, qsea, qsmooth, QSutils, Qtlizer, quantro, QuasR, R3CPET, RaggedExperiment, rain, ramwas, RandomWalkRestartMH, rat2302frmavecs, Rbowtie, Rcade, rcellminer, rcellminerData, rCGH, RcisTarget, Rcwl, RcwlPipelines, RCy3, RCyjs, rDGIdb, ReactomePA, recount, recountWorkflow, recoup, RedeR, RefNet, regioneR, regsplice, ReQON, restfulSE, rexposome, RforProteomics, rfPred, RGMQL, RGMQLlib, RGraph2js, RGSEA, rhdf5, rhdf5client, Rhdf5lib, Rhisat2, Rhtslib, RiboProfiling, riboSeqR, RIVER, RJMCMCNucleosomes, RNAmodR, RNAmodR.AlkAnilineSeq, RNAmodR.Data, RNAmodR.ML, RNAmodR.RiboMethSeq, RNAprobR, RNAseq123, rnaseqcomp, RnaSeqSampleSize, RnaSeqSampleSizeData, Rnits, rols, ropls, rpx, rqt, Rsamtools, rScudo, RTCGAToolbox, RTN, RTNduals, RTNsurvival, RUVcorr, RUVSeq, RVS, rWikiPathways, S4Vectors, samExploreR, sampleClassifier, sampleClassifierData, sangerseqR, sapFinder, scater, scDblFinder, scDD, scds, SCLCBam, scMerge, SCnorm, scone, scoreInvHap, scPCA, scran, scRNAseq, scruff, segmentSeq, seqCAT, seqPattern, seqplots, seqsetvis, SeqSQC, sequencing, SeqVarTools, sesame, SEtools, sevenC, SGSeq, SharedObject, shinyMethyl, ShortRead, SIAMCAT, SigCheck, SigFuge, signatureSearch, signet, SigsPack, SIMD, similaRpeak, SIMLR, simpleSingleCell, simulatorZ, sincell, Single.mTEC.Transcriptomes, SingleCellExperiment, singleCellTK, SingleR, SingscoreAMLMutations, sitePath, slingshot, slinky, SMAD, SNPediaR, SNPhood, SNPhoodData, soGGi, sojourner, sparseDOSSA, sparsenetgls, SparseSignatures, SpatialCPie, specL, SpectralTAD, SpidermiR, splatter, SPLINTER, sRACIPE, SSPA, stageR, STAN, StarBioTrek, STATegRa, statTarget, strandCheckR, Structstrings, SubCellBarCode, SummarizedBenchmark, SummarizedExperiment, sva, SVAPLSseq, swfdr, switchde, synapter, systemPipeR, systemPipeRdata, TabulaMurisData, TargetSearch, tartare, TCGAbiolinks, TCGAbiolinksGUI, TCGAbiolinksGUI.data, TCGAutils, TENxBrainData, TENxBUSData, TENxPBMCData, TFARM, TFBSTools, TFHAZ, TFutils, tigre, TimerQuant, tissueTreg, TMixClust, TOAST, ToPASeq, topdownr, TPP, tracktables, trackViewer, transcriptogramer, transcriptR, traseR, TreeSummarizedExperiment, Trendy, tRNA, tRNAdbImport, tRNAscanImport, TRONCO, TTMap, TurboNorm, TVTB, twoddpcr, Ularcirc, UniProt.ws, variancePartition, VariantAnnotation, VariantFiltering, variants, VariantToolsData, VCFArray, vidger, ViSEAGO, vsn, wavClusteR, XBSeq, xcms, Xeva, yamss, YAPSA, yriMulti, zebrafishRNASeq, zinbwave Links To Me Build Report Build Report Package Archives
Follow Installation instructions to use this package in your R session.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4