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pysam · PyPI

Project description

pysam — a Python package for reading, manipulating, and writing genomic data sets.

pysam is a lightweight wrapper of the HTSlib API and provides facilities to read and write SAM/BAM/CRAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command-line functionality of samtools and bcftools. The module supports compression and random access through indexing.

This module provides a low-level wrapper around HTSlib’s C API using Cython and a high-level API for convenient access to the data within standard genomic file formats.

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Download URL: pysam-0.23.3.tar.gz
Upload date: Jun 10, 2025
Size: 5.0 MB
Tags: Source
Uploaded using Trusted Publishing? Yes
Uploaded via: twine/6.1.0 CPython/3.12.9

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File metadata File hashes Hashes for pysam-0.23.3-cp38-cp38-manylinux_2_28_aarch64.whl Algorithm Hash digest SHA256 7565c85fc636d75029ef4e133461c513a848c2d0ecd0489571f4fde1efa22d3b MD5 0ce705f9368327dd31ffb9fe4b545baa BLAKE2b-256 5a56ab27f22c21879de48d37f23311bacfcd8a46130f8b074f5f231fbd17a5d8

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Details for the file pysam-0.23.3-cp38-cp38-macosx_10_9_x86_64.whl.

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The following attestation bundles were made for pysam-0.23.3-cp38-cp38-macosx_10_9_x86_64.whl:

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