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2d histogram contour in Python

How to make 2D Histogram Contour plots in Python with Plotly.

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A 2D histogram contour plot, also known as a density contour plot, is a 2-dimensional generalization of a histogram which resembles a contour plot but is computed by grouping a set of points specified by their x and y coordinates into bins, and applying an aggregation function such as count or sum (if z is provided) to compute the value to be used to compute contours. This kind of visualization (and the related 2D histogram, or density heatmap) is often used to manage over-plotting, or situations where showing large data sets as scatter plots would result in points overlapping each other and hiding patterns.

Plotly Express is the easy-to-use, high-level interface to Plotly, which operates on a variety of types of data and produces easy-to-style figures. The Plotly Express function density_contour() can be used to produce density contours.

In [1]:

import plotly.express as px
df = px.data.tips()

fig = px.density_contour(df, x="total_bill", y="tip")
fig.show()

Marginal plots can be added to visualize the 1-dimensional distributions of the two variables. Here we use a marginal histogram. Other allowable values are violin, box and rug.

In [2]:

import plotly.express as px
df = px.data.tips()

fig = px.density_contour(df, x="total_bill", y="tip", marginal_x="histogram", marginal_y="histogram")
fig.show()

In [3]:

import plotly.express as px
df = px.data.tips()

fig = px.density_contour(df, x="total_bill", y="tip", facet_col="sex", color="smoker")
fig.show()

In [4]:

import plotly.express as px
df = px.data.tips()

fig = px.density_contour(df, x="total_bill", y="tip")
fig.update_traces(contours_coloring="fill", contours_showlabels = True)
fig.show()

By passing in a z value and a histfunc, density contours can perform basic aggregation operations. Here we show average Sepal Length grouped by Petal Length and Petal Width for the Iris dataset.

In [5]:

import plotly.express as px
df = px.data.iris()

fig = px.density_contour(df, x="petal_length", y="petal_width", z="sepal_length", histfunc="avg")
fig.show()

To build this kind of figure with graph objects without using Plotly Express, we can use the go.Histogram2d class.

In [6]:

import plotly.graph_objects as go

import numpy as np
np.random.seed(1)

x = np.random.uniform(-1, 1, size=500)
y = np.random.uniform(-1, 1, size=500)

fig = go.Figure(go.Histogram2dContour(
        x = x,
        y = y
))

fig.show()

In [7]:

import plotly.graph_objects as go

import numpy as np

x = np.random.uniform(-1, 1, size=500)
y = np.random.uniform(-1, 1, size=500)

fig = go.Figure(go.Histogram2dContour(
        x = x,
        y = y,
        colorscale = 'Blues'
))

fig.show()

In [8]:

import plotly.graph_objects as go

import numpy as np

x = np.random.uniform(-1, 1, size=500)
y = np.random.uniform(-1, 1, size=500)

fig = go.Figure(go.Histogram2dContour(
        x = x,
        y = y,
        colorscale = 'Jet',
        contours = dict(
            showlabels = True,
            labelfont = dict(
                family = 'Raleway',
                color = 'white'
            )
        ),
        hoverlabel = dict(
            bgcolor = 'white',
            bordercolor = 'black',
            font = dict(
                family = 'Raleway',
                color = 'black'
            )
        )

))

fig.show()

In [9]:

import plotly.graph_objects as go

import numpy as np

t = np.linspace(-1, 1.2, 2000)
x = (t**3) + (0.3 * np.random.randn(2000))
y = (t**6) + (0.3 * np.random.randn(2000))

fig = go.Figure()
fig.add_trace(go.Histogram2dContour(
        x = x,
        y = y,
        colorscale = 'Blues',
        reversescale = True,
        xaxis = 'x',
        yaxis = 'y'
    ))
fig.add_trace(go.Scatter(
        x = x,
        y = y,
        xaxis = 'x',
        yaxis = 'y',
        mode = 'markers',
        marker = dict(
            color = 'rgba(0,0,0,0.3)',
            size = 3
        )
    ))
fig.add_trace(go.Histogram(
        y = y,
        xaxis = 'x2',
        marker = dict(
            color = 'rgba(0,0,0,1)'
        )
    ))
fig.add_trace(go.Histogram(
        x = x,
        yaxis = 'y2',
        marker = dict(
            color = 'rgba(0,0,0,1)'
        )
    ))

fig.update_layout(
    autosize = False,
    xaxis = dict(
        zeroline = False,
        domain = [0,0.85],
        showgrid = False
    ),
    yaxis = dict(
        zeroline = False,
        domain = [0,0.85],
        showgrid = False
    ),
    xaxis2 = dict(
        zeroline = False,
        domain = [0.85,1],
        showgrid = False
    ),
    yaxis2 = dict(
        zeroline = False,
        domain = [0.85,1],
        showgrid = False
    ),
    height = 600,
    width = 600,
    bargap = 0,
    hovermode = 'closest',
    showlegend = False
)

fig.show()

Dash is an open-source framework for building analytical applications, with no Javascript required, and it is tightly integrated with the Plotly graphing library.

Learn about how to install Dash at https://dash.plot.ly/installation.

Everywhere in this page that you see fig.show(), you can display the same figure in a Dash application by passing it to the figure argument of the Graph component from the built-in dash_core_components package like this:

import plotly.graph_objects as go # or plotly.express as px
fig = go.Figure() # or any Plotly Express function e.g. px.bar(...)
# fig.add_trace( ... )
# fig.update_layout( ... )

from dash import Dash, dcc, html

app = Dash()
app.layout = html.Div([
    dcc.Graph(figure=fig)
])

app.run(debug=True, use_reloader=False)  # Turn off reloader if inside Jupyter

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