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Showing content from https://lists.gnu.org/archive/html/emacs-devel/2022-11/msg01098.html below:

native compilation sets user-init-file to .eln file

# byte-compile your init.el, then

emacs   # init.el is compiled to native code, and user-init-file => init.el

C-x C-c

emacs   # user-init-file => points to init-*-*.eln

Which I imagine is unintended, as there are other places in the code (for example, custom) that expect user-init-file to point to an .el.

Note: The above recipe is entirely reproducible in my system, as long as running Emacs native-compiles init.el. I add this caveat because I suppose there's some size/complexity threshold to trigger the native compilation (a one-line init.el[c] is not native-compiled, for example).


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