Documentation and vignettes are available here.
Install the latest version of flashier from GitHub:
install.packages("remotes")
remotes::install_github("willwerscheid/flashier")
Once you have installed the package, load the package in R:
Next, run an example analysis of the GTEx data set:
data(gtex) fl <- flash(gtex,greedy_Kmax = 3,backfit = TRUE)
For a more detailed introduction to flashier, see the introductory vignette and, later, the other vignettes.
To learn more, visit the package website, and view the "flash" help page in R:
If you find the flashier package or any of the source code in this repository useful for your work, please cite:
Jason Willwerscheid, Peter Carbonetto and Matthew Stephens. ebnm: an R package for solving the empirical Bayes normal means problem using a variety of prior families. arXiv:2110.00152.
Copyright (c) 2018-2024, Jason Willwerscheid, Peter Carbonetto and Matthew Stephens.
All source code and software in this repository are made available under the terms of the MIT license.
Please note that function names changed in flashier version 0.2.44. If you are using flashier code from previous versions, please make the following substitutions, and note that many parameter names have changed as well:
Old Name New Name as.ebnm.fn flash_ebnm conv.crit.elbo flash_conv_crit_elbo_diff conv.crit.factors flash_conv_crit_max_chg_F conv.crit.loadings flash_conv_crit_max_chg_L display.elbo flash_verbose_elbo display.elbo.diff flash_verbose_elbo_diff display.F.max.chg flash_verbose_max_chg_F display.L.max.chg flash_verbose_max_chg_L display.max.chg flash_verbose_max_chg ff.elbo flash_fit_get_elbo ff.est.tau flash_fit_get_est_tau ff.fixed.tau flash_fit_get_fixed_tau ff.g flash_fit_get_g ff.KL flash_fit_get_KL ff.p2m flash_fit_get_p2m ff.pm flash_fit_get_pm ff.tau flash_fit_get_tau flash.add.greedy flash_greedy flash.backfit flash_backfit flash.fit flash_fit flash.fix.factors flash_factors_fix flash.init flash_init flash.init.factors flash_factors_init flash.nullcheck flash_nullcheck flash.remove.factors flash_factors_remove flash.reorder.factors flash_factors_reorder flash.set.factors.to.zero flash_factors_set_to_zero flash.set.verbose flash_set_verbose init.fn.default flash_greedy_init_default init.fn.irlba flash_greedy_init_irlba init.fn.softImpute flash_greedy_init_softImputeThe flashier R package was developed by Jason Willwerscheid, Peter Carbonetto and Matthew Stephens, with many other contributors.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4