bugphyzz is a collection of bacterial physiological features to be used as a resource for physiological discovery and producing signatures. We are continuously curating bugphyzz databases through 3 main methods: webscraping, bulk download from online databases, and manual curation from literature. Mainly this database was concieved for analyzing microbiome data using physiological information. Bugphyzz can allow a user to look at specific physiologies, and create signature sets with specific bugs. The uniform structure of the data is what allows for the latter to manifest.
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
##Release version
BiocManager::install("bugphyzz")
## Devel version
BiocManager::install("waldronlab/bugphyzz")
After installation, check vignettes with:
browseVigenttes("bugphyzz")
Link: https://zenodo.org/doi/10.5281/zenodo.10980653
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