When using difference thresholds for my high confidence variants I ran into this issue when try to compute AlleleFreq.
Error in apply(X = matrix_positions, MARGIN = 1, FUN = function(x) { :
dim(X) must have a positive length
In addition: Warning message:
In split.default(x = idx_denom, f = rep(1:8, each = length(x = variants))) :
data length is not a multiple of split variable
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