Hello,
I am trying to run SCTransform on a subset of my seurat object and here is the error I get :
seuratobj <- SCTransform(seuratobj, vars.to.regress = "percent.mt", verbose = TRUE)
Calculating cell attributes for input UMI matrix
Variance stabilizing transformation of count matrix of size 22846 by 73390
Model formula is y ~ log_umi
Get Negative Binomial regression parameters per gene
Using 2000 genes, 73390 cells
| | 0%Error in while ((it <- it + 1) < limit && abs(del) > eps) { :
missing value where TRUE/FALSE needed
In addition: There were 50 or more warnings (use warnings() to see the first 50)
could you please let me know what I am doing wrong ?
thanks for your help and time
morgane
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