Provides tools for importing and working with bibliographic references. Greatly enhances the bibentry class in R by providing a class BibEntry which stores BibTeX and BibLaTeX references, and can be easily searched by any field, by date ranges, and by various formats for name lists using R's person class.
Package: RefManageR
Version: 0.14.3
Date: 2017-06-02
Title: Straightforward 'BibTeX' and 'BibLaTeX' Bibliography Management
Authors@R: person(c("Mathew", "W."), "McLean", role = c("aut", "cre"),
email = "mathew.w.mclean@gmail.com")
Author: Mathew W. McLean [aut, cre]
Maintainer: Mathew W. McLean <mathew.w.mclean@gmail.com>
Description: Provides tools for importing and working with bibliographic
references. It greatly enhances the 'bibentry' class by providing a class
'BibEntry' which stores 'BibTeX' and 'BibLaTeX' references, supports 'UTF-8'
encoding, and can be easily searched by any field, by date ranges, and by
various formats for name lists (author by last names, translator by full names,
etc.). Entries can be updated, combined, sorted, printed in a number of styles,
and exported. 'BibTeX' and 'BibLaTeX' '.bib' files can be read into 'R' and
converted to 'BibEntry' objects. Interfaces to 'NCBI Entrez', 'CrossRef', and
'Zotero' are provided for importing references and references can be created
from locally stored 'PDF' files using 'Poppler'. Includes functions for citing
and generating a bibliography with hyperlinks for documents prepared with
'RMarkdown' or 'RHTML'.
License: GPL-2 | GPL-3 | BSD_3_clause + file LICENSE
Imports:
xml2,
jsonlite,
utils,
plyr,
tools,
httr,
bibtex,
lubridate (>= 1.5.0),
stringr,
methods
Suggests:
knitr,
testthat
Encoding: UTF-8
Depends:
R (>= 3.0)
VignetteBuilder: knitr
BugReports: https://github.com/mwmclean/RefManageR/issues
RoxygenNote: 6.0.1
https://github.com/mwmclean/RefManageR
Reproducibility because it provides functions as well as vignette examples of working together with knitr to include references in reproducible reports. Data access because of the functions it provides for importing bibliographic information into R.
Anyone that wants to write reproducible reports or simply organize bibliographic data from a variety of sources.
No package I'm aware of provides all the functionality, but there is some overlap with other packages.
Base R provides the bibentry
class. RefManageR
provides a class BibEntry
that extends bibentry
in a number of ways, such as support for BibLaTeX
; improved handling of name list fields (author, editor, etc.); improved handling of dates (using lubridate
); additional options for sorting, formatting, and printing; and additional methods that make it easier to search, sort, and modify parts of the BibEntry
object. There is a small overlap with the packages rentrez
and rcrossref
, in that RefManageR
can make use of the same APIs that those packages use to get references. However, RefManageR
parses the results differently and returns a BibEntry
object.
Aside from the packages and version of R
listed above in the DESCRIPTION, poppler is needed if a user want to extract bibliographic information from PDF files on their machine.
Confirm each of the following by checking the box. This package:
paper.md
with a high-level description in the package root or in inst/
.Note: I already submitted to JOSS here
DetailDoes R CMD check
(or devtools::check()
) succeed? Paste and describe any errors or warnings:
Does the package conform to rOpenSci packaging guidelines? Please describe any exceptions:
Exceptions: I did not follow your guidelines when naming the functions in my package since they were named long ago and have been on CRAN for a long time now (I used title case and no underscores).
If this is a resubmission following rejection, please explain the change in circumstances:
If possible, please provide recommendations of reviewers - those with experience with similar packages and/or likely users of your package - and their GitHub user names:
@karthik @cboettig @sckott
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