remotes_2.0.2
> sessionInfo()
R version 3.5.3 (2019-03-11)
Platform: x86_64-apple-darwin17.7.0 (64-bit)
Running under: macOS High Sierra 10.13.6
Matrix products: default
BLAS/LAPACK: /usr/local/Cellar/openblas/0.3.5/lib/libopenblasp-r0.3.5.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] Rcpp_1.0.1 knitr_1.22 magrittr_1.5 usethis_1.4.0
[5] devtools_2.0.1 pkgload_1.0.2 R6_2.4.0 rlang_0.3.2
[9] tools_3.5.3 pkgbuild_1.0.2 xfun_0.5 sessioninfo_1.1.1
[13] cli_1.1.0 withr_2.1.2 remotes_2.0.2 assertthat_0.2.1
[17] digest_0.6.18 rprojroot_1.3-2 crayon_1.3.4 processx_3.3.0
[21] callr_3.2.0 fs_1.2.6 ps_1.3.0 clisymbols_1.2.0
[25] testthat_2.0.1 curl_3.3 memoise_1.1.0 glue_1.3.1
[29] compiler_3.5.3 desc_1.2.0 backports_1.1.3 prettyunits_1.0.2
>
Running in cloned package from Exp-Micro-Ecol-Hub/emeScheme@c2d5544
When I run remotes::install_deps(".") in Rstudio, it works, i.e. asks if dependencies should be updated.
If I run it in an R console in the same directory, I get the following error:
> remotes::install_deps(".")
Error: HTTP error 401.
Bad credentials
Rate limit remaining: 59/60
Rate limit reset at: 2019-04-05 10:54:09 UTC
>
Debugging it, led to:
> remotes::install_deps(".")
debugging in: remotes::install_deps(".")
debug: {
packages <- dev_package_deps(pkgdir, repos = repos, dependencies = dependencies,
type = type, ...)
dep_deps <- if (isTRUE(dependencies))
NA
else dependencies
update(packages, dependencies = dep_deps, quiet = quiet,
upgrade = upgrade, build = build, build_opts = build_opts,
...)
}
Browse[2]> n
debug: packages <- dev_package_deps(pkgdir, repos = repos, dependencies = dependencies,
type = type, ...)
Browse[2]> n
Error: HTTP error 401.
Bad credentials
Rate limit remaining: 55/60
Rate limit reset at: 2019-04-05 10:54:09 UTC
>
and subsequently
> debugonce(remotes:::dev_package_deps)
> remotes::install_deps(".")
debugging in: dev_package_deps(pkgdir, repos = repos, dependencies = dependencies,
type = type, ...)
debug: {
pkg <- load_pkg_description(pkgdir)
repos <- c(repos, parse_additional_repositories(pkg))
deps <- local_package_deps(pkgdir = pkgdir, dependencies = dependencies)
if (is_bioconductor(pkg)) {
bioc_repos <- bioc_install_repos()
missing_repos <- setdiff(names(bioc_repos), names(repos))
if (length(missing_repos) > 0)
repos[missing_repos] <- bioc_repos[missing_repos]
}
combine_deps(package_deps(deps, repos = repos, type = type),
remote_deps(pkg, ...))
}
Browse[2]> n
debug: pkg <- load_pkg_description(pkgdir)
Browse[2]> n
debug: repos <- c(repos, parse_additional_repositories(pkg))
Browse[2]> n
debug: deps <- local_package_deps(pkgdir = pkgdir, dependencies = dependencies)
Browse[2]> n
debug: if (is_bioconductor(pkg)) {
bioc_repos <- bioc_install_repos()
missing_repos <- setdiff(names(bioc_repos), names(repos))
if (length(missing_repos) > 0)
repos[missing_repos] <- bioc_repos[missing_repos]
}
Browse[2]> n
debug: combine_deps(package_deps(deps, repos = repos, type = type),
remote_deps(pkg, ...))
Browse[2]> package_deps(deps, repos = repos, type = type)
Error: HTTP error 401.
Bad credentials
Rate limit remaining: 54/60
Rate limit reset at: 2019-04-05 10:54:09 UTC
Browse[2]> remote_deps(pkg, ...)
Error: HTTP error 401.
Bad credentials
Rate limit remaining: 53/60
Rate limit reset at: 2019-04-05 10:54:09 UTC
Browse[2]>
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