An HTML version of the package documentation can be found here:
https://protviz.github.io/prozor
For CRAN version (not the newest). Please use the github version.
install.packages("prozor")
This is how you install the github version.
install.packages("remotes")
remotes::install_github("protviz/prozor")
downlod git repo. Use roxygenize2 to document new functions. Than run these 2 commands to update namespace and Rd files:
library(devtools) document()
Example for creating a fasta file with the fgcz_create_fasta.R script
Go to fgcz-r-035.uzh.ch
ls ./fasta_db/p3071_Chlorella more ./fasta_db/p3071_Chlorella/annotation.txt more ./fasta_db/p3071_Chlorella/uniprot-taxonomy_3071.fasta clear /usr/local/lib/R/site-library/prozor/script/fgcz_create_fasta.R -h /usr/local/lib/R/site-library/prozor/script/fgcz_create_fasta.R ./fasta_db/p3071_Chlorella nodecoy -o /srv/www/htdocs/FASTA/ /usr/local/lib/R/site-library/prozor/script/fgcz_create_fasta.R ./fasta_db/p3071_Chlorella -o /srv/www/htdocs/FASTA/ cat p3071_Chlorella_d.txt cat p3071_Chlorella_d.txt | bfabric_save_fasta.py 3071 /srv/www/htdocs/FASTA/fgcz_3071_Chlorella_d_20200604.fasta # 3071 is the bfabric project name
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