in image-based spatial transcriptomics data
The jazzPanda package contains functions to find marker genes based on the spatial coordinates for imaging-based spatial transcriptomics technologies including 10x Xenium, NanoString CosMx and Vizgen MERSCOPE.
To install jazzPanda from Bioconductor, use the following commands:
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("jazzPanda")
To install jazzPanda from github, use the following commands:
library(devtools)
devtools::install_github("phipsonlab/jazzPanda")
In order to view the vignette for jazzPanda use the following command:
browseVignettes("jazzPanda")
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