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Showing content from https://github.com/petermr/CEVOpen below:

petermr/CEVOpen: Contentmining of Open phytochemical literature for medicinal activities

This is an OpenNotebook project to analyze the composition and activity of oils derived from plants as reported in Open Access literature.

Using EuropePMC and ContentMine's getpapers/ami up to 10,000 articles on essential oils are available. These report some/all of:

• plant identity
• literature survey of previously reported activities
• oil chemical composition (by chemical name)
• experimental determination of activity (often against organisms)

The literature is analyzed to suggests terms for inclusion in dictionaries. All terms are linked to Wikidata where possible

• plant (species binomial or genus) from EssoilDB (cleaned)
• plant part not yet transferred
• [extraction methodology] and metadata not yet transferred
• chemical compound from EssoildDB (cleaned)
• activity (medicinal, other biological (e.g. insect repellent, pheromone))
• targetOrganism (e.g. bacteria, viruses, fungi, parasites, vectors)

Exploratory and production searches.

files relating to the management of the project.

Statistical Analysis of Classification from Annotators (Ananya Singha)link

We are writing a paper as we go. Hopefully in time for a special issue.

We are building a Docker distribution of the software.

All the interns, volunteers and contributors should adhere to the code of conduct, outlined here

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