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Robot diff labels are not appearing correctly · Issue #1026 · ontodev/robot · GitHub

For some reason when I do a diff of two OWL files created from NCBITaxon, the labels appear to be replaced by IDs when the newer ontology is set as --right.

Command:

robot diff \
 --left ncbitaxon_import.owl \
 --right ncbitaxon_import.new.owl \
 --output ncbitaxon_diff.html \
 --format html

Results:

If I run the diff in reverse the labels appear as expected without error.

Command:

robot diff \
 --right ncbitaxon_import.owl \
 --left ncbitaxon_import.new.owl \
 --output ncbitaxon_diff-rev.html \
 --format html

Results:

This behavior is not limited to html output. I get the same results for other formats that use labels (e.g. markdown, pretty) and --labels TRUE with no format set. It's also not limited to Robot 1.9.0; I get the same results with 1.8.3.

Any idea what's going on?

• OWL files:
  • Older: ncbitaxon_import.owl
  • Newer: ncbitaxon_import.new.owl
• Diff output:
  • With unexpected behavior (newer as --right): ncbitaxon_diff.html
  • With expected behavior (files reversed): ncbitaxon_diff-rev.html

java 17.0.3.1 2022-04-22 LTS
Java(TM) SE Runtime Environment (build 17.0.3.1+2-LTS-6)
Java HotSpot(TM) 64-Bit Server VM (build 17.0.3.1+2-LTS-6, mixed mode, sharing)

MacOS 12.4, ARM processor

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