An R package for tracking cells and analyzing their trajectories.
cellmigRation is under active development and a stable version is yet to be released. However, you can install the current development version of cellmigRation from GitHub with:
# install.packages("remotes")
remotes::install_github("ocbe-uio/cellmigRation")
Example usage:
library(cellmigRation) #> Loading required package: foreach data(TrajectoryDataset) df <- CellMig(TrajectoryDataset[1:100, ]) preproc <- rmPreProcessing(df, PixelSize = 1.24, TimeInterval = 100) #> This dataset contains: 1 cell(s) in total #> This dataset contains: 1 cell(s) with more than three steps in their tracks #> The minimum number of steps: 100 #> The maximum number of steps: 100 #> Number of cells with a total number of steps less than 100 steps : 0 #> All the tracks are adjusted to have only 100 steps
Some cellmigRation features are also available as a standalone web application powered by an R package called Shiny. The Shiny app is still under construction, so it is not feature-complete and is not guaranteed to perform as expected. Until release, we advise you to use the R package directly.
To access the cellmigRation Shiny app, visit https://ocbe.shinyapps.io/cellmigRation/.
Alternatively, you can run the Shiny app locally on your computer. To do so, download a copy of this repository and either run make runshiny or R -e "shiny::runApp('Shinyapp', port=3029)" from its root directory.
RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4