<—⬇️⬇️⬇️(Start of section that can be deleted after forking the template)⬇️⬇️⬇️—>
If you use the templateR
R package template, or any of the rworkflows
suite tools, please cite:
Brian M. Schilder, Alan E. Murphy, & Nathan G. Skene (2023) The rworkflows suite: automated continuous integration for quality checking, documentation website creation, and containerised deployment of R packages, Research Square; https://doi.org/10.21203/rs.3.rs-2399015/v1
templateR
is a template designed to make developing new R packages easy by providing:
rworkflows
).citation("<packageName>")
. Also used to auto-populate the README.Rmd.To get started, simply click on the green Use this template button at the top right of the templateR
repo.
To use certain features of rworkflows
, you may need to set up one or more GitHub Secrets:
PAT_GITHUB
[Optional]: Can grant access to private repos on GitHub Actions. You can generate your very own Personal Authentication Token with usethis::create_github_token()
. See the GitHub docs for details.DOCKER_TOKEN
[Optional]: Allows GitHub Actions to push to a DockerHub account.The GitHub Actions workflows included in this template will automatically create a documentation website for your package via GitHub Pages.
After the rworkflows
action has successfully run on Ubuntu for the first time, a new branch will appear in your repo called “gh-pages”.
<—⬆️⬆️⬆️(End of section that can be deleted after forking the template)⬆️⬆️⬆️—>
If you use templateR
, please cite:
author1, author2, author3 (publicationYear) articleTitle, journalName; volumeNumber, linkToPublication
if(!require("BiocManager")) install.packages("BiocManager") BiocManager::install("neurogenomics/templateR") library(templateR)
## R version 4.4.2 (2024-10-31)
## Platform: aarch64-apple-darwin20
## Running under: macOS Sequoia 15.5
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0
##
## locale:
## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: America/New_York
## tzcode source: internal
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## loaded via a namespace (and not attached):
## [1] gtable_0.3.6 jsonlite_2.0.0 renv_1.1.5
## [4] dplyr_1.1.4 compiler_4.4.2 BiocManager_1.30.26
## [7] tidyselect_1.2.1 dichromat_2.0-0.1 rvcheck_0.2.1
## [10] scales_1.4.0 yaml_2.3.10 fastmap_1.2.0
## [13] here_1.0.1 ggplot2_3.5.2 R6_2.6.1
## [16] generics_0.1.4 knitr_1.50 yulab.utils_0.2.0
## [19] tibble_3.3.0 desc_1.4.3 dlstats_0.1.7
## [22] rprojroot_2.1.0 pillar_1.11.0 RColorBrewer_1.1-3
## [25] rlang_1.1.6 badger_0.2.5 xfun_0.52
## [28] fs_1.6.6 cli_3.6.5 magrittr_2.0.3
## [31] rworkflows_1.0.6 digest_0.6.37 grid_4.4.2
## [34] rstudioapi_0.17.1 lifecycle_1.0.4 vctrs_0.6.5
## [37] evaluate_1.0.4 glue_1.8.0 data.table_1.17.8
## [40] farver_2.1.2 rmarkdown_2.29 tools_4.4.2
## [43] pkgconfig_2.0.3 htmltools_0.5.8.1
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