Machine Learning Fairness Extension for mlr3.
Install the development version from github:
remotes::install_github("mlr-org/mlr3fairness") Why should I care about fairness in machine learning?
Machine Learning model predictions can be skewed by a range of factors and thus might be considered unfair towards certain groups or individuals. An example would be the COMPAS algorithm, which is a popular commercial algorithm used by judges and parole officers for scoring criminal defendant’s likelihood of reoffending (recidivism). Studies have shown, that the algorithm might be biased in favor of white defendants. Biases can occur in a large variety of situations where algorithms automate or support human decision making e.g. credit checks, automatic HR tools along with a variety of other domains.
The goal of mlr3fairness is to allow for auditing of mlr3 learners, visualization and subsequently trying to improve fairness using debiasing strategies.
⚠️ Note Bias auditing and debiasing solely based on observational data can not guarantee fairness of a decision making system. Several biases, for example comming from the data can not be detected using the approaches implemented in
mlr3fairness. This goal of this software is thus to allow for a better understanding and first hints at possible fairness problems in a studied model.
Fairness Measures: Audit algorithmms for fairness using a variety of fairness criteria. This also allows for designing custom criteria.
Fairness Visualizations: Diagnose fairness problems through visualizations.
Debiasing Methods: Correct fairness problems in three lines of code.
Fairness Report: Obtain a report regarding an algorithm’s fairness. (Under development)
More Information
mlr3fairness requires information about the protected attribute wrt. which we want to assess fairness. This can be set via the col_role “pta” (protected attribute).
task$col_roles$pta = "variable_name"
In case a non-categorical or more complex protected attribute is required, it can be manually computed and added to the task. mlr3fairness does not require specific types for pta, but will compute one metric for every unique value in the pta column.
mlr3fairness offers a variety of fairness metrics. Metrics are prefixed with fairness. and can be found in the msr() dictionary. Most fairness metrics are based on a difference between two protected groups (e.g. male and female) for a given metric (e.g. the false positive rate: fpr). See the vignette for a more in-depth introduction to fairness metrics and how to choose them.
library(mlr3) library(mlr3fairness)key description fairness.acc Absolute differences in accuracy across groups fairness.mse Absolute differences in mean squared error across groups fairness.fnr Absolute differences in false negative rates across groups fairness.fpr Absolute differences in false positive rates across groups fairness.tnr Absolute differences in true negative rates across groups fairness.tpr Absolute differences in true positive rates across groups fairness.npv Absolute differences in negative predictive values across groups fairness.ppv Absolute differences in positive predictive values across groups fairness.fomr Absolute differences in false omission rates across groups fairness.fp Absolute differences in false positives across groups fairness.tp Absolute differences in true positives across groups fairness.tn Absolute differences in true negatives across groups fairness.fn Absolute differences in false negatives across groups fairness.cv Difference in positive class prediction, also known as Calders-Wevers gap or demographic parity fairness.eod Equalized Odds: Mean of absolute differences between true positive and false positive rates across groups fairness.pp Predictive Parity: Mean of absolute differences between ppv and npv across groups fairness.acc_eod=.05 Accuracy under equalized odds < 0.05 constraint fairness.acc_ppv=.05 Accuracy under ppv difference < 0.05 constraint
Additional custom fairness metrics can be easily constructed, the vignette contains more details. The fairness_tensor() function can be used with a Prediction in order to print group-wise confusion matrices for each protected attribute group. We can furthermore measure fairrness in each group separately using MeasureSubgroup and groupwise_metrics.
Visualizations can be used with either a Prediction, ResampleResult or a BenchmarkResult. For more information regarding those objects, refer to the mlr3 book.
fairness_accuracy_tradeoff: Plot available trade-offs between fairness and model performance.
compare_metrics: Compare fairness across models and cross-validation folds.
fairness_prediction_density: Density plots for each protected attribute.
Debiasing methods can be used to improve the fairness of a given model. mlr3fairness includes several methods that can be used together with mlr3pipelines to obtain fair(er) models:
library(mlr3pipelines)
lrn = as_learner(po("reweighing_wts") %>>% lrn("classif.rpart"))
rs = resample(lrn, task = tsk("compas")$filter(1:500), rsmp("cv"))
rs$score(msr("fairness.acc"))
Overview:
key output.num input.type.train input.type.predict output.type.train EOd 1 TaskClassif TaskClassif NULL reweighing_os 1 TaskClassif TaskClassif TaskClassif reweighing_wts 1 TaskClassif TaskClassif TaskClassifmlr3fairness furthermore contains several learners that can be used to directly learn fair models:
mlr3fairness includes two fairness datasets: adult and compas. See ?adult and ?compas for additional information regarding columns.
You can load them using tsk(<key>).
An important step towards achieving more equitable outcomes for ML models is adequate documentation for datasets and models in machine learning. mlr3fairness comes with reporting aides for models and datasets. This provides empty templates that can be used to create interactive reports through RMarkdown.
report_modelcard Modelcard for ML models Mitchell et al., 2018 link report_datasheet Datasheet for data sets Gebru et al., 2018 link report_fairness Fairness Report -1 link
Usage:
The report_* functions instantiate a new .Rmd template that contains a set of pre-defined questions which can be used for reporting as well as initial graphics. The goal is that a user extends this .Rmd file to create comprehensive documentation for datasets, ML models or to document a model’s fairness. It can later be converted into a html report usingrmarkdown’s render.
rmdfile = report_datasheet() rmarkdown::render(rmdfile)
We provide a short example detailing how mlr3fairness integrates with the mlr3 ecosystem.
library(mlr3fairness)
#Initialize Fairness Measure
fairness_measure = msr("fairness.fpr")
#Initialize tasks
task_train = tsk("adult_train")
task_test = tsk("adult_test")
#Initialize model
learner = lrn("classif.rpart", predict_type = "prob")
#Verify fairness metrics
learner$train(task_train)
predictions = learner$predict(task_test)
predictions$score(fairness_measure, task = task_test)
#Visualize the predicted probability score based on protected attribute.
fairness_prediction_density(predictions, task_test)
fairml are included as learners in mlr3fairness.Several future developments are currently planned. Contributions are highly welcome!
mlr3fairness is a free and open source software project that encourages participation and feedback. If you have any issues, questions, suggestions or feedback, please do not hesitate to open an “issue” about it on the GitHub page! In case of problems / bugs, it is often helpful if you provide a “minimum working example” that showcases the behaviour.
The fairness report is inspired by the Aequitas Bias report. ↩
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