Make sure you have Java 1.8 installed. On MacOS you can use
We'll also need some dependencies from Homebrew/Science:
brew tap homebrew/science
Installing RepSeq software bundle:
brew tap mikessh/repseq
brew install migec
brew install vdjtools
brew install vdjdb
# The following come separately for MacOS and Linux (linuxbrew)
brew install igblast-linux
brew install migmap-linux
brew install igblast-macos
brew install migmap-macos
This will install the software and make command line aliases: migec, vdjtools, etc. To allocate more memory for Java (in case of Out Of Memory Errors), append -Xmx? option, e.g. migec -Xmx40G ....
N.B. If the script complains about BLAST already installed - use brew unlink blast
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