A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from https://github.com/marbl/canu/commit/f1eadb317cc2731fc4a2a10c222c684d830919cc below:

Request uncompressed lengths for read length histograms. Issue #1906. · marbl/canu@f1eadb3 · GitHub

File tree Expand file treeCollapse file tree 1 file changed

+2

-1

lines changed

Filter options

Expand file treeCollapse file tree 1 file changed

+2

-1

lines changed Original file line number Diff line number Diff line change

@@ -418,7 +418,7 @@ sub generateReadLengthHistogram ($$) {

418 418

$cmd .= " -raw \\\n" if ($tag eq "cor");

419 419

$cmd .= " -corrected \\\n" if ($tag eq "obt");

420 420

$cmd .= " -corrected -trimmed \\\n" if ($tag eq "utg");

421 -

$cmd .= " -histogram \\\n";

421 +

$cmd .= " -uncompressed \\\n";

422 422

$cmd .= " -lengths \\\n";

423 423

$cmd .= "> ./$asm.seqStore/readlengths-$tag.dat \\\n";

424 424

$cmd .= "2> ./$asm.seqStore/readlengths-$tag.err \n";

@@ -462,6 +462,7 @@ sub generateReadLengthHistogram ($$) {

462 462

$cmd .= " -raw \\\n" if ($tag eq "cor");

463 463

$cmd .= " -corrected \\\n" if ($tag eq "obt");

464 464

$cmd .= " -corrected -trimmed \\\n" if ($tag eq "utg");

465 +

$cmd .= " -uncompressed \\\n";

465 466

$cmd .= " -histogram \\\n";

466 467

$cmd .= "> ./$asm.seqStore/readlengths-$tag.txt \\\n";

467 468

$cmd .= "2> ./$asm.seqStore/readlengths-$tag.err \n";

You can’t perform that action at this time.


RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4