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Showing content from https://github.com/marbl/canu/commit/e0ed3bb4e61863250de78ad95ae51a176491b7d5 below:

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 @@ -614,6 +614,7 @@

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 setGlobalIfUndef("oeaHaploConfirm", 5);

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 setGlobalIfUndef("utgErrorRate", 0.120);

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 setGlobalIfUndef("cnsErrorRate", 0.200);

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+
 setGlobalIfUndef("maxInputCoverage", 200);

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 if (($numPacBio > 0) &&


 @@ -628,6 +629,7 @@

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 setGlobalIfUndef("oeaHaploConfirm", 5);

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 setGlobalIfUndef("utgErrorRate", 0.045);

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 setGlobalIfUndef("cnsErrorRate", 0.075);

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 setGlobalIfUndef("maxInputCoverage", 200);

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 if (($numPacBio == 0) &&

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 @@ -1554,9 +1554,6 @@ sub checkParameters () {

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 addCommandLineError("ERROR: Invalid 'cnsConsensus' specified (" . getGlobal("cnsConsensus") . "); must be 'quick', 'pbdagcon', or 'utgcns'\n");

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 if (!defined(getGlobal("maxInputCoverage"))) {

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 setGlobal("maxInputCoverage", 200);

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 }

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 if (getGlobal("maxInputCoverage") eq "all") {

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 setGlobal("maxInputCoverage", 0);

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