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Showing content from https://github.com/marbl/canu/commit/afdf6db558a8c29a91e99c5c72e13acfdf58f028 below:

Fix crash detecting cycle when both reads are not in a tig. Issue #2… · marbl/canu@afdf6db · GitHub

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 @@ -109,8 +109,12 @@ bool isCycle(TigVector &tigs,

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 BestEdgeOverlap *next = (lRead->position.isForward() == true) ? (OG->getBestEdgeOverlap(lRead->ident, true)) : (OG->getBestEdgeOverlap(lRead->ident, false));

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 // if we have no best edges or they don't point to a single tig, no issue

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-
 if (!prev->isValid() || !next->isValid() || tigs.inUnitig(prev->readId()) != tigs.inUnitig(next->readId()))

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-
 return false;

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+
 if ( (prev->isValid() == false) ||

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+
 (tigs.inUnitig(prev->readId()) == 0) ||

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 (next->isValid() == false) ||

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 (tigs.inUnitig(next->readId()) == 0) ||

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 (tigs.inUnitig(prev->readId()) != tigs.inUnitig(next->readId())))

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 return false;

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 // find the reads corresponding to our best

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 if (logFileFlagSet(LOG_ORPHAN_DETAIL))

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