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 @@ -709,6 +709,17 @@ alignEdLib(dagAlignment &aln,

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 tigend = min((int32)tiglen, (int32)floor(utgpos.max() + padding));

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 if (tigend < tigbgn) {

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 fprintf(stderr, "alignEdLib()-- WARNING: tigbgn %d > tigend %d - tiglen %d utgpos %d-%d padding %d\n",

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 tigbgn, tigend, tiglen, utgpos.min(), utgpos.max(), padding);

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 // try to align it to full

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 tigbgn = 0;

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 tigend = utgpos.max();

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 fprintf(stderr, "alignEdLib()-- WARNING: updated tigbgn %d > tigend %d - tiglen %d utgpos %d-%d padding %d\n",

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 tigbgn, tigend, tiglen, utgpos.min(), utgpos.max(), padding);

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 }

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 assert(tigend > tigbgn);

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 edlibFreeAlignResult(align);

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 if (verbose)

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