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 @@ -62,7 +62,6 @@ main(int argc, char **argv) {

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 } else if (strcmp(argv[arg], "-s") == 0) {

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 G->checkTrivialDNA = true;

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 fprintf(stderr, "Correcting HIFI reads\n");

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 } else if (strcmp(argv[arg], "-c") == 0) { // For 'corrections' file input

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 G->correctionsName = argv[++arg];


 @@ -145,6 +144,9 @@ main(int argc, char **argv) {

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 // Load the reads for the overlaps we are going to be correcting, and apply corrections to them

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 fprintf(stderr, "Correcting reads " F_U32 " to " F_U32 ".\n", G->bgnID, G->endID);

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 fprintf(stderr, " %s alignment errors in simple sequence repeats (-s %ssupplied).\n",

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 G->checkTrivialDNA ? "Ignoring" : "Allowing",

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 G->checkTrivialDNA ? "" : "not ");

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 FILE *correctedReads = G->correctedName == NULL ? NULL : fopen(G->correctedName, "w");

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 Correct_Frags(G, seqStore, correctedReads);

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