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 Without `-a`, `-c` or `--cs`, minimap2 only finds *approximate* mapping

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 locations without detailed base alignment. In particular, the start and end

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 positions of the alignment are impricise. With one of those options, minimap2

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 positions of the alignment are imprecise. With one of those options, minimap2

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 will perform base alignment, which is generally more accurate but is much

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 slower.

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 @@ -742,7 +742,7 @@ s2 i Chaining score of the best secondary chain

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 NM i Total number of mismatches and gaps in the alignment

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 MD Z To generate the ref sequence in the alignment

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 AS i DP alignment score

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 SA Z List of other supplementary alignments

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 SA Z List of other supplementary alignments (with approximate CIGAR strings)

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 ms i DP score of the max scoring segment in the alignment

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 nn i Number of ambiguous bases in the alignment

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 ts A Transcript strand (splice mode only)

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