HiContactsData is a companion data package giving programmatic access to several processed Hi-C files for demonstration, such as cool, mcool and pairs files. It is meant to be used with HiContacts.
The only function provided by HiContactsData package is HiContactsData(). Several files are avaible using this function, namely:
From Bastie, Chapard et al., Nature Structural & Molecular Biology 2022:
sample: yeast_wt, format = fastq_R{12})sample: yeast_wt, format = HiCool_log)sample: yeast_wt, format = cool)sample: yeast_wt, format = mcool)sample: yeast_g1, format = mcool)sample: yeast_g1, format = mcool)sample: yeast_g2m, format = pairs)sample: yeast_g2m, format = pairs)sample: yeast_wt, format = hic)sample: yeast_wt, format = hicpro_matrix)sample: yeast_wt, format = hicpro_bed)sample: yeast_wt, format = pairs)sample: yeast_Eco1, format = mcool)sample: yeast_Eco1, format = pairs)From Bonev et al., Cell 2017:
sample: mESCs, format = mcool)sample: mESCs, format = pairs)From Krietenstein et al., Mol. Cell 2020:
sample: microC, format = mcool)RetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4