Hi @zachary-foster !
I am encountering an error when using use_total in zero_low_counts. I get this error using my data as well the hmp data
here is the code (from your tutorial)
print(hmp_otus)print(hmp_samples)obj2 <- parse_tax_data(hmp_otus, class_cols = "lineage", class_sep = ";", class_key = c(tax_rank = "info", tax_name = "taxon_name"), class_regex = "^(.+)__(.+)$")print(obj2)obj2$data$tax_data <- zero_low_counts(obj2, "tax_data", use_total = TRUE, min_count = 5)
and I get the following error:
Error in if (all(!is_greater_than_max)) { : missing value where TRUE/FALSE needed
The error persist no matter what value I use for min_counts when use_total = TRUE. If I use the default setting use_total = FALSE I can process the dataset completely following the tutorial.
Using:R version 3.3.3 (2017-03-06) -- "Another Canoe"metacoder verison 0.2.0.9011OSX 10.10.5
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