Showing content from https://github.com/bpp/bpp/releases/tag/v4.8.4 below:
Release bpp v4.8.4 · bpp/bpp · GitHub
- Releases
- v4.8.4
Added
- usedata=2 for using fixed gene trees as data instead of sequences
- Simulation of sequences with genotyping errors with mixed diploid and haploid
sequences
- Command-line option --keep-label
Changed
- Number of digits in a1b1 file
- Printing inf for Effu and c if Effy=1
- Alingments from compressed site patterns are now written in separate file
Fixed
- Crash due to mismatching header line in a1b1 file
- Order of sampling W values in a1b1 file
- Theta pjump calculation for mixture of gibbs and sliding window sampling by
introducing move counters for each eps
- Incorrect number of steplengths when using --theta_mode 3 under MSC-I model 3
- Heredity scaler estimation when combined with gibbs sampler for thetas
- Incorrect typecast in diploid code when tipdating
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